1. Conference: Mathematics in Imaging Elisabeth Wetzer
Date: 20190107–20190111
Address: Centre International de Rencontres Math´ematiques, Marseille, France Title: Towards automated multiscale imaging and analysis in TEM
2. Conference: Network of European BioImage Analysts (NEUBIAS) Conference Joakim Lindblad
Date: 20190202–20190208
Address: Neum¨unster Abbey, Luxembourg City
Title: Texture-based oral cancer detection: a performance analysis of deep learning approaches Comment: Workshops and Conference.
3. Conference: Network of European BioImage Analysts (NEUBIAS) Conference Nataˇsa Sladoje
Date: 20190202–20190208
Address: Neum¨unster Abbey, Luxembourg City
Title: EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (2019 update)
Comment: Workshops and Conference.
4. Conference: Network of European BioImage Analysts (NEUBIAS) Conference Nadezhda Koriakina
Date: 20190206–20190208
Address: Neum¨unster Abbey, Luxembourg City
Title: Visualization of convolutional neural network class activations in automated oral cancer detection for interpretation of malignancy associated changes
5. Conference: Network of European BioImage Analysts (NEUBIAS) Conference Elisabeth Wetzer
Date: 20190206–20190208
Address: Neum¨unster Abbey, Luxembourg City
Title: Towards automated multiscale glomeruli detection and analysis in TEM by fusion of CNN and LBP maps
Comment: Also two posters, one on the same topic, one on ”Texture-based oral cancer detection: a perfor-mance analysis of deep learning approaches”.
6. Conference: 37th Annual Swedish Symposium on Image Analysis (SSBA 2019) Hanqing Zhang
Date: 20190318–20190320
Address: Lindholmen Conference Center, G¨oteborg
Title: Automated screening in zebrafish using a customized optical projection tomography system Comment: A conference paper was submitted.
7. Conference: 37th Annual Swedish Symposium on Image Analysis (SSBA 2019) Johan ¨Ofverstedt
Date: 20190318–20190320
Address: Lindholmen Conference Center, G¨oteborg
Title: Robust symmetric affine image registration / stochastic distance functions with applications in object detection and image segmentation
Comment: Two talks given.
8. Conference: 37th Annual Swedish Symposium on Image Analysis (SSBA 2019) Elisabeth Wetzer
Date: 20190319–20190320
Address: Lindholmen Conference Center, G¨oteborg
Title: Oral cancer detection: a comparison of texture focused deep learning approaches 9. Conference: National Bioinformatics Infrastructure Sweden (NBIS) retreat
Petter Ranefall Date: 20190410
Address: Haga Slott, Enk¨oping Title: BioImage informatics facility Comment: + Poster.
10. Conference: SciLifeLab Science Summit Carolina W¨ahlby, Anindya Gupta Date: 20190515
Address: UKK, Uppsala
Title: Automated prediction of mesenchymal cell migration modes in confocal microscopy images using deep learning
11. Conference: SciLifeLab Mini Symposium Anna Klemm
Date: 20190523 Address: Solna
Title: SciLifeLab BioImage Informatics Facility
12. Conference: ELRIG 2019 (European Laboratory Research &Innovation Group) – Advances in Cell Based Screening in Drug Discovery
Carolina W¨ahlby
Date: 20190522–20190524 Address: G¨oteborg
Title: Intro: Multiplexed screening with single cell resolution
Comment: Carolina W¨ahlby organised the meeting together with a local committee at Astra Zeneca, and introduced the session on Multiplexed screening with single cell resolution.
13. Conference: UPPTECH alumn event Carolina W¨ahlby
Date: 20190611 Address: Stockholm
Title: Den digitala framtiden-AI i m¨ansklighetens tj¨anst
Comment: A popular science alumn event organised by UPPTECH - an initiative to promote science and technology at UU.
14. Conference: 3rd Swedish Symposium on Deep Learning (SSDL 2019) Teo Asplund, Eva Breznik
Date: 20190610–20190611
Address: Norrk¨opings Visualiseringscenter C, Norrk¨oping
Title: CNNs on graphs: a new pooling approach and similarities to mathematical morphology 15. Conference: Phenotarget community meeting
Carolina W¨ahlby Date: 20190613 Address: Stockholm
Title: The microscope as an automated measurement tool
Comment: The first annual meeting of a national community focused on phenotypic drug screening.
16. Conference: Phenotarget community meeting Hanqing Zhang
Date: 20190613 Address: Stockholm
Title: Automated screening in zebrafish using a customized optical projection tomography system 17. Conference: Eastern European Machine Learning Summer School (EEML)
Eva Breznik
Date: 20190701–20190706 Address: Bucharest, Romania
Title: Abdominal organ segmentation in whole-body MRI Comment: Summer school, with poster presentations one evening.
18. Conference: European Congress and Exhibition on Advanced Materials and Processes (EUROMAT) Ida-Maria Sintorn
Date: 20190901–20190905
Address: Stockholm City Conference Centre, Stockholm
Title: Imaging and characterization of inorganic and biological nanoparticles and fibres in MiniTEM Comment: E-poster presentation.
19. Conference: Uppsala Zebrafish Forum workshop Hanqing Zhang
Date: 20190927 Address: EBC, UU
Title: Zebrafish Image Informatics (ZII)
20. Conference: Uppsala Zebrafish Forum workshop Amin Allalou
Date: 20190927 Address: EBC, UU
Title: Zebrafish Image Informatics (ZII) – services built on the vertebrate automated screening technology 21. Conference: SciLifeLab Facility Forum
Amin Allalou
Date: 20190930–20191001
Address: Djur¨on¨aset, V¨armd¨o, Djurhamn Title: High-throughput screening in live zebrafish 22. Conference: ViB Conference: The Brain Mosaic 2019
Gabriele Partel
Date: 20191010–20191011 Address: Leuven, Belgium
Title: High resolution spatial gene expression maps for unsupervised brain compartment annoation Comment: Federation of European Biochemical Societies (FEBS) Letters Poster Prize awarded.
23. Conference: Network of European BioImage Analysts (NEUBIAS) TS13 Training School for Facility Staff Anna Klemm
Date: 20191014–20191017 Address: Porto, Portugal
Title: Advanced ImageJ macro programming
24. Conference: Institute for Molecular Medicine Finland (FIMM) High Content Screening Symposium Carolina W¨ahlby
Date: 20191021
Address: Helsinki, Finland
Title: In situ sequencing & tissue morphology; from images to compartments and cells 25. Conference: Women in Computational Biology
Carolina W¨ahlby
Date: 20191111–20191113
Address: Howard Hughes Medical Institute (HHMI) Janelia, Washington DC, USA Title: BioImage Analysis
Comment: Carolina W¨ahlby was also part of organising this first meeting with focus on female researchers in computational biology.
26. Conference: Frontiers in Engineering Ida-Maria Sintorn
Date: 20191117–20191120
Address: The Royal Swedish Academy of Engineering Sciences, Stockholm Title: AI and IA for automated microscopy
27. Conference: InFuturum Carolina W¨ahlby
Date: 20191128–20191129 Address: G¨oteborg
Title: AI applications in university health and academia - prostate cancer (in Swedish) Comment: A meeting for the leaders of medical faculties and university hospitals in Sweden.
28. Conference: MedTech-CBA workshop Ewert Bengtsson
Date: 20191203–20191204
Address: Noors Conference Castle, Knivsta
Title: Reflections on the past, the present and the future
29. Conference: German–Swedish Innovation Partnership for eHealth - “Joining Forces - European AI in Health”
Robin Strand Date: 20191218
Address: Swedish Ministry of Health, Stockholm Title: AI and image processing