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Campylobacter survival under stress

conditions encountered between poultry farm

and the human intestine

Yazan Alfalah

__________________________________________

Master Degree Project in infection biology, 45 credits. 2018

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Contents

Abstract ………Page 3 Popular Scientific Summary……….Page 4 Keywords………..Page 5 Introduction ………..Page 5 • General view……….Page 5 • Pathogenesis, Treatment and Prevention………..Page 5 • Epidemiology………Page 6 • Diagnosis and Growth conditions ………..Page 6

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Campylobacter survival under stress conditions

encountered between poultry farm and the

human intestine.

Abstract

Campylobacter are probably the most important bacterial pathogen related to food-borne

illnesses; specifically, gastroenteritis and diarrheal diseases. These bacteria can be isolated from various environments, but always originate from the intestine of warm blooded animals. Particularly, Campylobacter are found in the intestinal tract of poultry, and due to

contamination of poultry meat and also further contamination of other food they can cause human infections. Sometimes this results in larger outbreaks, such as during 2016-2017 in Sweden where thousands of persons got infected by a single strain of Campylobacter jejuni sequence type 918 (ST-918). The same strain was also identified amongst a large number of poultry farms and suspicions were directed towards dirty transport cages for poultry as a main route for transmitting the strain between different farms. Similar scenarios with large

outbreaks related to one or two single strains (ST-50 and ST-257) had also been observed in previous years and this raised questions about certain strains being especially adapted to survive outside the intestine. The aim here was to examine whether outbreak strains and other strains of C. jejuni have different potential to resist different stress conditions that may be encountered between the poultry farm and the human intestine.

Results and conclusion: We observed that C. jejuni strains were able to survive up to 9 days

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Popular Scientific Summary

The challenges that face Campylobacter on their way from the poultry

farms to our intestines

Contaminated food is an important cause behind many infections. A large number of different disease causing microorganisms can be transmitted by food and sometimes this results in large outbreaks. The bacterium Campylobacter is one of the most common causes behind foodborne illnesses and outbreaks. Infection is manifested by symptoms such as diarrhea and abdominal pain and may also lead to more severe complications, especially in individuals with weak immune systems. Particularly, contaminated chicken meat is an important cause of

Campylobacter infections worldwide. During the last few years, several outbreaks of

campylobacter related to poultry have been reported in Sweden. The latest outbreak occurred during 2016-2017, resulted in tens of thousands of reported human illnesses and was caused by one specific strain of Campylobacter jejuni that had spread among a large number of poultry farms across Sweden. Also in previous years, single strains of C. jejuni were widely spread among poultry farms and caused large number of infections in humans. The extensive distribution of these specific strains raises questions about them being especially apt to survive stress conditions encountered between the poultry farms and the human intestine. In this study, we compared stress tolerance for three of the outbreak strains from recent years to that of five non-outbreak strains of C. jejuni. Bacteria were subjected to temperature

challenges during cold storage and cooking, exposure to UV light, the acidic media in our stomachs, bile acid concentrations similar to that in the duodenum and survival in chicken feces under humid and dehydrating conditions. Also, we examined the ability of these strains to form biofilm, since biofilm formation is an important strategy for many bacteria to resist stress.

Temperature challenges were performed by adding known amounts of Campylobacter to chicken meat before incubation at 4, 60, 68 and 72˚C for different periods of time. At each time point the proportions of surviving bacteria were determined. The tolerance to UV light, low pH and bile acids was determined in a similar way except that all experiments were performed in lab media or on nutrient plates. Survival in chicken feces was tested by mixing known concentrations of bacteria with sterilized feces followed by bacterial counts at

different time points. Finally, the ability for biofilm formation was tested by letting bacterial solutions stand in glass tubes before washing and quantification of cells adhering to the glass surface by staining.

All strains survived for at least nine days on poultry meat at 4°C and outbreak strains were among those with the highest bacterial counts after this time period. Among three tested strains, all survived for one minute at 72°C and up to three minutes at 60°C. Only outbreak strains were examined. UV-irradiation had a large impact on bacterial counts within a few seconds with only a tiny fraction surviving up to 20 seconds. There was no clear difference between outbreak and non-outbreak strains. Acidic media of the stomach proved to be an efficient barrier to Campylobacter with none of the strains surviving more than 30 seconds, while the presence of bile acids had no effect on bacterial counts. In chicken feces two of the outbreak strains showed better survival than all other strains, both under humid and

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Keywords

Campylobacter, Micro-aerobic, Survival, Dehydration, Poultry, Zoonosis, Inactivation,

Biofilms.

Introduction

General view

Campylobacter are S-shaped gram negative bacteria, that can infect humans and animals

(Anvarinejad et al., 2016 ; Giacomelli et al., 2014) They are motile flagellated bacteria and may contain either unipolar or bipolar flagella (Balaban & Hendrixson, 2011). Two main genes are responsible for motility; FlaA and FlaB; these genes undergo intergenic

recombination which results in different serotypes of flagella with different virulence characteristics (Chaisowwong et al., 2012; Radomska et al., 2016). According to the World Health Organization (WHO) there are currently 17 species and 6 subspecies of

Campylobacter, with the two species Campylobacter jejuni and C. coli mainly associated with

human infections (WHO, 2018). The main known reservoir is poultry, animals usually carry

Campylobacter asymptomatically (Doyle & Erickson, 2006; Johnson et al., 2014), and

humans usually get Campylobacter by consuming contaminated food or by being in contact with infected animals (Fonseca et al., 2014; Sarkar et al., 2014). The infectious dose of

Campylobacter is relatively low, and 500 bacterial cells may be enough to cause infection

(Papic et al., 2017).

Pathogenesis, Treatm ent and Prevention

Campylobacter cause a gastrointestinal infection in human (campylobacteriosis) with an

incubation period of 24-72. The infection is associated with; inflammatory bloody diarrhea or dysentery with abdominal cramps, fever and pain. Rarely and as late complications,

bacteremia and Guillain-Barrés Syndrome (GBS) can be serious symptoms in untreated campylobacteriosis (Schnee & Petri, 2017). GBS is manifested as paralysis, and it’s believed that C. jejuni antigens cross-react with neural structures which may be the cause behind the development of Guillain-Barrés syndrome (Hahn, 1998; Lastovica et al., 1997). Many steps are required for the infection to take place. First, penetration and entry into the gastrointestinal mucosa is required, and this is established by the pathogen with the help of its high motility and helical shape (Wallis, 1994). Second, the bacteria must adhere to the enterocytes of the gut where it induces diarrhea by releasing specific toxins. C. jejuni produces many different toxins, specifically Enterotoxin and Cytotoxin, and these toxins vary between strains. There is a correlation between the toxins and the severity of the infection, but their exact role is still unclear (Crofts et al., 2018; Nielsen et al., 2010). For medication, rehydration with solutions and minerals is usually the first choice in treatment (Benoit et al., 2014; Randrianirina et al., 2014), but for severe cases antibiotics are prescribed. Azithromycin is the drug of choice in children while quinolones and tetracycline are usually used for gastrointestinal infections in adults. Other antibiotics such as, amoxicillin, ampicillin, aminoglycosides and

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associated with these medications (Randrianirina et al., 2014). Infections with Campylobacter can be prevented and according to (WHO) there are several strategies for this including, (1) control measures at all stages in the food chain, (2) disinfection of sewage before disposal in the countries with poor sewage disposal systems, (3) reducing campylobacter in poultry by improving biosecurity, (4) applying adequate hygiene conditions during slaughtering, (5) prevention methods during cooking to avoid cross contamination and (6) heat treatment and irradiation (Golz et al., 2014; Lee et al., 1995).

Epedim iology

C. jejuni, and to some extent also C. coli, is considered to be one of the main causes of

foodborne diseases in many developed countries, including Sweden. It can also cause extended complications for immunocompromised individuals (Edwards et al., 2014),

especially AIDS patients, since it can easily spread to the blood stream and cause bacteremia (Ruiz-Contreras et al., 1997). Other species such as C. lari, C. fetus and C. upsaliensis have also been isolated from patients but much less frequently (Mughini Gras et al., 2013; Patrick et al., 2018). In the United States there are about 14 cases that are diagnosed annually for each 100,000 persons in the population (Batz, Hoffmann, & Morris, 2014; Guerrant et al. 1990; Tam et al., 2012), and about 200,000 cases of Campylobacter infections were reported in the EU during 2014 (Casanova et al., 2015; Mangen et al., 2015; Sadkowska-Todys &

Kucharczyk, 2014). However, due to underreporting, The European Food Safety Authority estimated that there were a total of about nine million cases of campylobacteriosis in the EU in 2011 (Bezirtzoglou, Dekas, & Charvalos, 2011; Sadkowska-Todys & Kucharczyk, 2011). Additionally, there are high costs for public health organizations economically and in the view of individual health and productivity, which were reported to be more than 2 billion Euros per year in Europe and between 1 and 4 billion dollars in the USA (de Wit et al., 2000; Schmutz et al., 2017). These numbers reflect the importance of this pathogen and the need for studies which aim to give more understanding about its virulence and its survival.

Diagnosis and Growth conditions

Campylobacter are oxidase positive and catalase positive (Nakajima et al., 2016; van Vliet et

al., 1999) and for diagnosis, cultivation of stool specimens or body tissues and fluids is the standard method to isolate different strains (Khoshbakht et al., 2015; Kirk, Nielsen, &

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mechanisms to overcome stresses which may be encountered all the way from the poultry slaughter house to the human intestine (Bereswill & Kist, 2002; Kreuder et al.,2017).

Stress tolerance and Biofilm formation

It has been noticed that C. jejuni transforms into a coccal form upon exposure to atmospheric oxygen (Harvey & Leach, 1998). Campylobacter can also survive at refrigeration

temperatures up to 14 days (Eideh & Al-Qadiri, 2011; Gruntar et al.,2015; Sampers et al., 2010), but are poorly viable at room temperature (Rogol et al.,1990; Thormar et al., 2006). Fortunately, heating can destroy Campylobacter cells due to its sensitivity to temperatures above 48˚C (Solis-Soto et al., 2011; Sung, Hiett, & Stern, 2005). Similar to most other organisms, Campylobacter are highly sensitive to UV light although UV radiation is not used as a sterilization method in many countries’ food safety management including Sweden (Butler et al., 1987) (Kentson et al., 2018; Klionsky et al., 2016). In the human stomach where the pH is relatively low (1.5 - 2) (Ahirwar et al., 2014), Campylobacter are not able to survive for longer times, while in the duodenum where the pH becomes higher (5 – 6) due to secretion of bile acids and bicarbonate from the gall bladder and the pancreas, Campylobacter can survive longer, and also cause infections (Santini et al., 2010). Bile acids contain deoxy-cholate which has been found to enhance survival and virulence of campylobacter through the stimulation of the flaA promoter (Mohan et al., 2017; Ugarte-Ruiz et al., 2013); FlaA is the major component of the Flagella and it’s an important factor for colonization (Svensson et al., 2009; Q. V. Tu et al., 2008; Wosten et al., 2004). Interestingly, Campylobacter can survive outside the human intestine under different humidity conditions (Kalupahana et al., 2018; Smith et al., 2016); it has been found that Campylobacter can survive on poultry feces and resist the environmental changes for about six days (Kalupahana et al., 2018; Smith et al., 2016). Biofilm formation is one of the important strategies used by many bacteria in order to survive different stress conditions like those mentioned previously (Efimochkina, Bykova, et al., 2017; Efimochkina et al., 2018). We can define biofilm as a complexation of layers of bacterial cells which are attached together within a matrix of EPS (Extracellular Polymeric Substances) (Beech et al., 2006; Lin et al., 2018). C. jejuni is one of these microorganisms which are able to form biofilms. Different types of biofilms with Campylobacter have been identified such as (1) surface attached structures, (2) at the surfaces of liquids as a pellicle and (3) in liquid cultures as floating aggregates (Efimochkina, Stetsenko, et al., 2017; Kassem et al., 2012; Rajashekara et al., 2009).

Significance of the study

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to have led to outbreaks in 2014-15 and in late 2015, but these were smaller and instead involved strains of sequence type 50 and 257, respectively.

In this study, several methods were set up for quantification of Campylobacter subjected to different types of stress including refrigeration and cooking temperatures, pH similar to that of the human stomach, UV-irradiation and survival in poultry feces under humid and dehydrating conditions. Also the ability to form biofilms was examined. Eight different strains were compared including non-outbreak strains, the outbreak strain C. jejuni ST-918, and two strains responsible for other recent outbreaks (ST257 and ST50).

Aim of the study

• To test whether outbreak strains of C. jejuni (ST-918, ST257 & ST-50) are more tolerant to stress conditions encountered between the poultry farm and the human intestine compared to non-outbreak strains.

Materials & Methods

1. Strains, sample preparation and growth conditions:

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Table 1: Campylobacter jejuni strains used in the study. ST stands for (Sequence Type), outbreak strains are highlighted.

2. Chicken meat preparation:

Chicken fillet of a brand that usually doesn’t contain Campylobacter was purchased from the store, and the meat was cut into pieces of 10g using a sharp knife. Pieces were put in freezing bags and stored at -20˚C until usage. To ensure the absence of Campylobacter in the meat; 10g of leftover pieces of meat were added to a 100ml flask together with Bolton broth, and incubated micro-aerobically at 41, 5˚C for 48 hours. After incubation, 100µl culture was spread on mCCDA. The meat was considered free of Campylobacter if no growth was observed on mCCDA after micro-aerobic incubation at 41, 5˚C for 48 hours.

3. Survival of Campylobacter on poultry meat at 4˚C:

Initially, survival at 4˚C was examined as this is a common temperature used for refrigeration storage of fresh chicken meat. For this, chicken pieces were thawed, put in stomacher bags (WHIRL-PAK®/ Nasco) and inoculated with 100µl bacterial solution corresponding to approximately 108 CFU. Initial concentrations of bacteria were determined by addition of 90 ml BPW to the bags, stomaching for 30 seconds and spreading of dilution series onto

mCCDA-plates. Plates were incubated as mentioned before, and the colonies were counted. Experimental samples were stored at 4˚C and harvested at day 2, day 4 and day 9 by addition of BPW, stomaching, dilution, spreading onto mCCDA, incubation and colony count.

Experiments were performed in technical triplicates with all eight strains of Campylobacter listed in Table 1.

4. Survival of campylobacter on poultry meat at elevated temperatures:

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from the water bath at time points between (0.25 and 2.5 minutes), for 68˚C, time points between 0.5 and 7 minutes were selected and for 60˚C time points were chosen between 1 and 10 minutes. After heat treatment the bags were cut open and put into stomacher bags along with 90ml BPW. Stomacher treatment, dilution, spreading on mCCDA plates and incubation of the plates were performed as described above and colonies were counted. Experiments were performed with three different strains (ST-50, ST-257 and ST-918) and repeated at three different occasions.

5. UV effect on campylobacter survival:

Survival of Campylobacter strains was tested when exposed to UV light. After spreading of the prepared bacterial dilutions on mCCDA plates (100µl, approximately 108 CFU), the plates were exposed to either UV light subtype-A (365nm/Thermo-Scientific) or subtype B

(302nm/Gel DocTM XR+/Bio-Rad) for different time periods. For UV-A time points between 5 and 60 seconds were tested and for UV-B time points between 3 and 20 seconds. Plates were incubated at the same conditions mentioned previously and colonies were counted. Experiments were performed in technical triplicates with eight strains of Campylobacter. For UV-A, experiments were performed in technical triplicates with the outbreak strain ST-918.

6. Survival of campylobacter in acidic media:

The survival of Campylobacter strains was examined at pH 2, which is similar to that of the human stomach. For this, 900 µl samples of BPW adjusted to pH 1.85 with 1 M HCl were prepared before addition of 100 µl bacterial culture (approximately 108 CFU) resulting in a bacterial solution in pH 2.0. Upon exposure between 15 and 60 seconds the low pH

environment was neutralized by transfer of 100 µl experimental culture into 9.9 ml BPW at neutral pH (7.32). Samples were spread onto mCCDA plates and the plates were incubated micro-aerobically using the same conditions as before and the colonies were counted. Experiments were performed in technical triplicates with eight strains of Campylobacter.

7. Bile Acids effect on Campylobacter survival

Since the concentration of bile acids in the human intestine usually ranges between 0.2 to 2%, bile acid concentrations of 0.5 and 2 % were tested to examine the survival of Campylobacter. For this two stock solutions were prepared by dissolving bile acid in BPW adjusted to pH 5.5 which corresponds to the pH of the human duodenum where bile acids enter. Bacterial solutions were prepared as mentioned above and 100μl of each bacterial solution

(approximately 108 CFU) were added to 900μl of each bile acid solution. After incubation between 30 seconds and 10 minutes, 100μl experimental culture was added to 9.9 ml BPW (pH= 7.31) to interrupt exposure to high concentrations of bile acids. Samples were spread onto mCCDA plates and colonies were counted upon micro-aerobic incubation. Experiments were performed twice with two strains of Campylobacter according to the limited time during the project.

8. Campylobacter survival in poultry feces with and without dehydration

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0,01g) mixture was added into small petri dishes (SARSTEDT/ 82.1194.500). Thereafter, 100μl of prepared bacterial solutions (corresponding to about 108 CFU/ml) were added to the dishes and the content was homogenized properly using plastic inoculation loops. All dishes were weighed and subsets of plates were either sealed with par-film (American National CanTM) to avoid loss of moisture or left unsealed to examine the effect of dehydration before incubation under aerobic conditions at 18 °C for 24, 48, 72 and 144 h. Primary concentrations of bacteria were determined by immediate plating, incubation and colony count. At each time point for harvest, petri dishes were taken out and weighed before addition of BPW up to a final sample weight of 10 g. Samples were mixed, spread onto mCCDA plates and incubated under the same conditions as above before colonies were counted. An initial test was

performed with all eight strains and the experiment was repeated with three strains.

9. Biofilm Formation

By using the protocol provided in (Reuter, Mark et al., 2010) with some modifications. In brief, bacterial strains pre-grown on BA-plates were dissolved in BHI (OXOID/ CM1135) to obtain a density of OD600= 0.5 ±0.01. Volumes of 1 ml bacterial solutions were added to glass tubes. BHI alone was used as negative controls. Upon static micro-aerobic incubation for 48 hours tubes were washed with water and then dried at 60˚C for 30 minutes. Remaining water drops inside the tubes were pipetted out carefully before addition of 1 ml Crystal violet 0.3% (BD/ 212525). Tubes were incubated with shaking at room temperature for 30 minutes before removal of the Crystal violate solution and washing five times with water. After drying at 37˚C, bound crystal violet inside the tubes was dissolved in 1 ml (Acetone 20% + Ethanol 80%) and OD590 was measured on a spectrophotometer (Cary 100 UV-Vis/ Agilent).

Experiments were performed in technical triplicates on all eight strains and results for clearly deviating replicates were removed.

Results

(A) Campylobacter survival at 4 °C

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Figure 1: Survival on poultry meat at 4˚C. Declining of bacterial concentrations (as percentages %) overtime; Blue (the primary concentrations), Red (after 2 days incubation), Green (after 4 days incubation) and Purple (after 9 days incubation). The outbreak strains are: ST-918, ST-257 and ST-50.

(B) Campylobacter survival at elevated temperatures; 72˚C, 68˚C and 60˚C

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However, there were slight differences in killing rates between the strains with ST-918

surviving for 1 min at 72˚C, for 1.5 min at 68˚C and for 3 min at 60˚C. ST-257 survived for as long as 5 min at both 60 and 68˚C while ST-50 survived slightly longer than the other strains at 72˚C. In summary, ST-918 appeared more sensitive to elevated temperatures compared to the other strains.

Figure 2: Survival on poultry meat at elevated temperatures. Comparison between outbreaks strains, ST-918 (Red), ST-257 (Blue) and ST-50 (Green). Bacterial concentrations (CFU/ml) overtime upon exposure to

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(C) Campylobacter tolerance to UV-irradiation:

Although the atmosphere absorbs most of the harmful UV light, sunlight still represents an important stress to many microorganisms. In this experiment, we examined the bactericidal effect on Campylobacter exposed to two subtypes of UV (UV-A & UV-B) which differ in their wavelengths; (320-400 nm and290-320 nm, respectively). When exposed to much less harmful UV-A (365nm), strain ST-918 showed no decline in bacterial counts even after one minute (Table 2). When exposed to more harmful UV-B light (302nm), however, numbers of ST-918 declined more than 105 fold after just 20 seconds of exposure (Figure 3). A similar result was also observed for strains ST-50, ST-4875 and ST-586, while the other strains tested were even more sensitive to UV-B irradiation (Figure 3).

ST-918/365nm

Time points Bacterial concentrations CFU/ml

0s 123* 103

5s 135* 103

10s 127* 103

30s 150* 103

60s 134* 103

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(D) Campylobacter survival at low pH

In the human stomach, the pH usually ranges between 1.5 and 2, which makes it a highly acidic environment that plays an important role in protection against different

microorganisms. We hypothesized that one reason behind the previously occurred outbreak could be that some strains of Campylobacter were more tolerant to the acidic media of the human stomach. To test this, all eight strains were challenged to low pH (pH=2) for different periods of time (15, 30, 45 and 60 seconds). The results indicate that none of the strains survived longer than 30 seconds and that highest bacterial count were found for the non-outbreak strain ST-586 (Table 3 and Figure 4). However, differences in survival for the eight strains were only very small.

Primary concentration correspond to 100%

Strain bacterial counts 15s 30s 45s 1min ST-45 53* 106 CFU/ml 1.37% 0.08% 0% 0% ST-47 37* 106 CFU/ml 4.51% 0.16% 0% 0% ST-50 31* 106 CFU/ml 1.42% 0.12% 0% 0% ST-257 44* 106 CFU/ml 5.69% 0.1% 0% 0% ST-586 40* 106 CFU/ml 7.23% 0.4% 0% 0% ST-918 34* 106 CFU/ml 1.9% 0.21% 0% 0% ST-1003 35* 106 CFU/ml 6.56% 0.05% 0% 0% ST-4875 34* 106 CFU/ml 1.71% 0.25% 0% 0%

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Figure 4: Campylobacter survival at low pH similar to that of the human stomach. Bacterial counts percentages of different strains of C. jejuni at pH=2, different time points (between 0 and 1 minute). The outbreak strains are: ST-918, ST-257 and ST-50.

(E) Effect of bile acids on the survival of campylobacter

In the duodenum, the first part of the human intestine, bile salt concentrations are within the range of 0.2-2%. Together with other compounds such as bicarbonate, the bile salts help increasing the pH to 5-6. As Campylobacter species infect and colonize the intestine of

poultry and humans, they should be able to tolerate high concentrations of bile salts at pH 5-6. To test this survival of two strains (ST-918 and ST-45) was examined in two different

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had no effect on the survival of campylobacter as there was no observed decline in bacterial counts after up to 10 minutes exposure (data not shown).

(F) Campylobacter survival in poultry feces under humid and dehydrating conditions

Campylobacter are able to survive in poultry feces outside the intestine for some time

(Kalupahana et al., 2018; Smith et al., 2016) if poultry farms are not properly cleaned after an infected flock, there is therefore a risk of transfer of a strain to the next. There is also a risk of transfer of bacteria between poultry farms with dirty transport equipment, which has been repeatedly observed in outbreaks during the past few years. To test whether outbreak strains survive better than non-outbreak strains we examined the survival of Campylobacter in poultry feces under humid and dehydrating conditions at 18˚C for 6 days. Interestingly, the outbreak strains survived generally better than the non-outbreak strains in both conditions (Table 4 and Figure 5). All tested strains could be detected after 3 days while outbreak strains ST-918 and ST-257 could be detected after up to 6 days incubation.

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(G) Ability to form biofilm

Biofilm formation is an important strategy used by many bacteria in order to resist different types of stress circumstances. We examined the ability for biofilm formation using all eight strains of Campylobacter. Most strains could form biofilms, but to different extent (Table 5). However, some of the strains could not, including the outbreak strain ST-918 and also strains ST-45 and ST-4875.

Samples/ Strains OD590 (Average value) Result

BHI 0.177 Control ST-45 0.146 (-) ST-47 0.271 (+) ST-50 0.36 (++) ST-257 0.239 (+) ST-586 0.287 (+) ST-918 0.146 (-) ST-1003 0.357 (++) ST-4875 0.186 (-)

Table 5: Biofilm formation. Strong biofilm forming strains (++), weak biofilm forming strains (+) and negative biofilm forming strains (-). Eight strains of C. jejuni, BHI (Blood-Heart Infusion) as control. OD590 (the optical density at wavelength 590nm for crystal violet). The outbreak strains are: ST-918, ST-257 and ST-50.

Discussion

In this study, we found several strong correlations between our results and those of previous studies within the area. Interestingly, repetition of our experiments showed a reliable

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genetic basis for differences in tolerance and resistance development (Chan, Le Tran,

Kanenaka, & Kathariou, 2001). Additionally, we found that the outbreak strains (918, ST-257 and ST-50) survived slightly better with higher bacterial counts after 9 days storage at 4˚C compared to most other strains examined. Another study have found that Campylobacter strains isolated from the clinic are more resistant and tolerant under cold storage at 4˚C (Chan et al., 2001). As conclusion, outbreak strains seem to be generally more resistant and tolerant to low temperatures used for refrigeration storage.

Similar to previous findings, elevated temperatures like those used in cooking showed high efficiency in eliminating Campylobacter. We saw some differences between the three outbreak strains examined where ST-257 could survive longest (5 minutes) at 60 and 68˚C while ST-50 survived longest (1.5 minutes) at 72˚C. However, the survival of all three examined C. jejuni strains were decreasing with increased temperature. In similar studies, the effect of thermal stress on C. jejuni and C. coli strains were examined and bacteria were able to survive for up to 5 minutes at temperatures ranging between 56.6 - 62.5˚C (J.E. Moore & R.H. Madden, 2000). Other studies have also tested the survival of Campylobacter in milk to investigate the efficiency of pasteurization process shown that different temperatures such like 50˚C and 60˚C are effective in eliminating and inactivating Campylobacter species within 4 and 1 minute respectively (Gill et al., 1981). However, it’s not unlikely that matrix effect from the milk contributes to this shortened survival. As conclusion, elevated temperatures

commonly used in cooking or pasteurization are effective in food sterilization and management with a long enough time of heat treatment.

UV-irradiation has a strong influence on living cells and it can be used as a bactericidal to kill most microorganisms. Yet it’s not used in many countries, including Sweden, during food hygiene practices. UV affects biological pathways and the protein synthesis mechanisms inside living cells, it might cause peptide bonds to be altered and thus DNA will be destroyed or changed (J. A. Parrish et al., 1978; Heinrich et al., 2016; J. C. Tu, 2002).When we

examined the influence of UV irradiation on campylobacter, we found that the UV-subtype is important for the efficiency of bacterial killing. There are three subtypes of UV radiation which are classified according to their wavelengths; UV-A (320-400 nm), UV-B (290-320 nm) and UV-C (100-290 nm) (Dardalhon et al., 2008; National Toxicology, 2002). We found that UV-A had no influence on the survival of the Campylobacter outbreak strain ST-918 after 1 minute exposure, while a large reduction was observed within 20 seconds for all eight strains tested when exposed to UV-B light. However, we have an idea that UV-A which is close to the visible light has a very low or even no effect on bacterial killing (E. R. Kashket and A. F. Brodie, 1962), so the experiments were performed just with lastly observed

outbreak strain ST-918 to save time and material. Other studies have also indicated that UV-B light is effective in bacterial elimination (Isohanni & Lyhs, 2009). However, they indicated that there is less effect when it’s applied on inoculated poultry meat than on bacterial cultures directly. Another study found that the artificial sunlight has a smaller effect on

Campylobacter as bacteria were able to survive up to 30 minutes of exposure (Obiri-Danso et

al., 2001).

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limited opportunities to infect and colonize the stomach in humans. Other studies have mentioned that there is no evidence of the isolation of C. jejuni from the stomach (Sahay et al., 1995). Yet, Campylobacter must be able to pass the low pH in the human stomach, and maybe transport with food could help them avoid the low pH levels. In contrast, C. jejuni strains are able to survive in the duodenum where bile acids play an important role in pH neutralization (pH= 5-6) (Castillo-Lopez et al., 2014; Matsuhisa & Tsukui, 2012; Zeller et al., 2015). In agreement with this, we didn’t observe a reduction in bacterial counts when

Campylobacter strains were tested with different concentrations of bile salts that exist

normally in human body (0.5 and 2%). This observation is in line with that Campylobacter species infect and colonize the intestine in humans and in poultry (Pielsticker et al., 2012). Furthermore, it has been found that deoxy-cholate, which is a part of bile acid salts, enhances the expression of the flaA gene which is important for colonization (Malik-Kale et al., 2008). Contaminated transport cages are believed to have been a major contributing factor for the spread of Campylobacter between poultry farms during the outbreaks in Sweden the past few years. We found that the outbreak strains of C. jejuni (ST-918, ST-257 and ST-50) are able to survive better and for longer periods on chicken feces compared to most non-outbreak strains. Only small differences were determined between humid and dehydrating conditions, however, ST-257 and at one occasion also ST-918, could survive for 6 days in chicken feces under humid conditions. These findings could explain why these strains became widely spread between poultry farms, remained at specific farms for extended time periods and could cause the large outbreaks. It has been noted by others, though, that there are some differences in survival between naturally and artificially contaminated feces (Ahmed et al., 2013). For example Ahmed et al. did not detect any bacteria after 6 days of incubation of artificially inoculated feces while they detected bacterial survival after 6 days in naturally contaminated feces. With this in mind, further studies should be performed using naturally contaminated feces to complement our results obtained here.

Interestingly, most of the tested strains were able to form biofilms, although there were some differences. For example, the outbreak strain ST-918 couldn’t form biofilm, which suggests that there are different mechanisms or strategies that ST-918 use to survive for extended time outside the intestine. Other strains such as ST-45 and ST-4875 couldn’t form biofilm either. However, our experiments for biofilm formation were done micro-aerobically which is considered to be the standard condition for Campylobacter growth (Davis & DiRita, 2008). Another study have shown that campylobacter species form biofilm better in the aerobic conditions (Reuter et al., 2010). The same authors also found that the strain ability to form biofilms is influenced by specific characteristics of bacteria such as motility. It would

therefore be interesting to perform further examinations of such characteristics and conditions on the strains we have used here.

In summary, C. jejuni strains examined here show some differences in resisting different stress conditions. They showed a decline in colony count overtime at refrigeration (4˚C), although they were all able to survive more than 9 days. Cooking (60˚C, 68˚C or 72˚C) can kill the bacteria within a relatively short period of time. Further, UV-irradiation is destructive for Campylobacter although it’s not used in food hygiene practices in many countries around the world including Sweden. Actually, the gastric pH in humans inhibits the survival of

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especially in the presence of bile salts which helps the survival and improves colonization and cause enteritis rather than gastritis. Additionally, C. jejuni strains are able to survive outside the intestine, specifically in poultry feces from where they transmit between poultry flocks within a farm as well as between farms during transportation. Finally, biofilm formation is a characteristic for a majority of the studied strains except for ST-918, ST-45 and ST-4875 which could be able to develop resistance to extra-intestinal stress using other strategies and mechanisms.

Interestingly, during most examined stress conditions, the outbreak strains of C. jejuni were more resistant and survived better than the other studied strains. This supports the hypothesis that outbreak strains are more fit to survive and spread outside the intestine and therefore cause more infections. Actually, this creates new hypothesizes that describe the mechanisms behind being an outbreak strain. Genetic basis, stress tolerance or different natural conditions could play essential roles in being an outbreak strain. To test this, more studies are needed on genetic mechanisms behind stress tolerance beside our experiments and findings presented here. These to more easily identify strains of C. jejuni that pose larger risks and be able to eliminate them from poultry production at an early stage. It’s also important to include more strains of C. jejuni and maybe also C. coli to confirm the results obtained here, especially that the experiments seem to be reproducible according to our obtained results. Finally, it would be important to perform experiments in biological triplicates as well to determine the variations between the biologically distinct samples.

Acknowledgements

I would like to mention that this work was supported by different institutions, first of all; The Swedish National Food Agency (Livsmedelsverket) which has provided the materials and the work place during this project. Many thanks as well to all biology department members who work there for being good helpful work partners. Secondly, I also want to acknowledge the Swedish National Veterinary Institute (SVA) for kindly providing strains ST-50 and ST-257.

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