Bioinformatics Engineering Program
Uppsala University School of Engineering
UPTEC X 09 029 Date of issue 2009-08 Author
Hoda Ibrahim
Title (English)
Evaluation and development of bioinformatics tools for design of ligation-based probes for nucleic acid analysis
Title (Swedish)
Abstract
The aim of this thesis is to develop a process for the selection of a target for the identification of microorganisms using the so-called padlock probes, and to design and implement a computer program that automates this process.
Keywords
Padlock probes, probe design, rolling circle amplification (RCA), AMSD, YODA, OligoArray 2.1
Supervisors
Johan Stenberg Q-linea
Scientific reviewer
Olle Eriksson
Department of information technology Uppsala University
Project name Sponsors
Language
English
Security
ISSN 1401-2138 Classification
Supplementary bibliographical information Pages
30
Biology Education Centre Biomedical Center Husargatan 3 Uppsala Box 592 S-75124 Uppsala Tel +46 (0)18 4710000 Fax +46 (0)18 555217